SVAtlas
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山东大学侯庆振团队等发布首个单细胞外囊泡多组学数据库——SVAtlas
生物世界· 2025-11-24 10:08
Core Insights - The article discusses the development of SVAtlas, a comprehensive single extracellular vesicle (EV) omics resource that addresses the challenges of analyzing EV heterogeneity and facilitates clinical applications in disease diagnostics [3][10]. Group 1: Background and Importance of EVs - Extracellular vesicles (EVs) are nano-sized particles secreted by cells, carrying important biomolecules like proteins and nucleic acids, and play a significant role in intercellular communication and disease progression [2]. - The presence of EVs in easily accessible bodily fluids such as blood and urine makes them ideal candidates for liquid biopsy in cancer and neurodegenerative disease research [2]. Group 2: Challenges in EV Research - Traditional bulk analysis techniques struggle to capture the molecular characteristics of individual EVs due to the high heterogeneity within EV populations, which obscures critical disease signals and hinders clinical application [2][5]. - The lack of standardized technology and fragmented data has limited the clinical application of EV biomarkers [2][5]. Group 3: Development of SVAtlas - The research team from Shandong University, led by Hou Qingzhen, constructed the first cross-disease, cross-body fluid, and cross-species single EV multi-omics atlas, named SVAtlas, published in Nucleic Acids Research [3][5]. - SVAtlas integrates self-sequencing data with results from 276 global research projects, covering 31 major diseases, 32 types of tissues and organs, and 10 types of biological fluids, including data from over 137 million single EVs [5]. Group 4: Features and Functionality of SVAtlas - The platform supports analysis of tissue/organ heterogeneity and disease-specific subgroups, providing global clustering, high-heterogeneity subgroup selection, and differential heatmaps to display single EV distribution and characteristics [7]. - SVAtlas includes a dynamic analysis platform with built-in computational biology tools for data browsing, preprocessing, clustering analysis, and interactive visualization, aiding in the identification of disease-specific biomarkers [8]. - The platform features an AI question-and-answer tool based on large language models (LLM) to assist users in navigating complex single EV characterization methods [8]. Group 5: Future Implications - The establishment of SVAtlas marks a new phase in single EV research, enabling standardized and multi-omics integration, allowing researchers to explore EV heterogeneity and discover potential biomarkers on a unified platform [10]. - With the addition of more data and novel omics, SVAtlas is expected to become a crucial tool in liquid biopsy, precision medicine, and disease diagnostics [10].